rs6321649 SNP Detail

Summary

• ID
  rs6321649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125229297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGTCTG CTTCCCTCTT
  CCCACAGGCA TGATGGATCG CCCCAGTGGA GGAAGCTAAG TGCTTGCAGA CAAAAAGCCC
  TTTTATCGTC CTCGGGTGGG CCACTGGCGT GACAGGCAGA TAAGTCAGGC TGAGGTGGCT
  CCCCATTAGG CGAGATGCGG ATGGATGGGG GTGGGGGGCC AGCAACCAAG CAGTTCTTTC
  Y
  ACTCTCAAAG ACCCAGTGGG CAGCCCCACC CCCACAGACT CCTACCCACC CCCTTCCCGC
  CTCAGATGAA ACCACAGCCT ATGGCTACAA GAAGCATCTC TGTTGGTGGA GTGTTTGCCT
  AGCATGCAGT GTTCGCCCTC CATACCACAC AGACCGGGTG CAGCGGCACA CACATCAAAT
  TGCACACAGA CAGCGGAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8727632	WI_WGS_5_123391948	WI	MOUSE	f	SNP							C		T
ss51197990	NES13817996	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6321649					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51197990	NES13817996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125229297 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620651	regulatory region 620651			1961 bp proximal