rs6321680 SNP Detail

Summary

• ID
  rs6321680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAGCCAGGAA
  CCCCCCACCC CCTTCTTCCG TTCTGCTATA CACCTTTAAT CCCAGCTTTT CCTTAAACTT
  ACTTCGCGGT CTCNCTACAG CAGAGCTCGA AAGTTCTGCC TGAACCCTGC ACGGCCCCAC
  AGACCCCAGG TCTCTGAGTA GCCTAGTAGT CTTATGAGGT CCCCTGGAAA TCGAATGGAT
  AGGTGGAAGG ATGAATGGGC AGACAGGCGG GTGAACAGAT GGACCGGTAG TTGAATGAGC
  K
  AGTGCATTCT GAATAGGAGA GCTCGGATTT ATTTTTCTTC TTTGAAACAG ATCCAGGCTC
  CGCCCCACAA GCACAGGCTG GAATAGTCTG GGACAGTCTA GCCCCTCGGG GACCAAGCAG
  CTGGACCAGG TGACCCTCTG TGACTCCCCC GAGCCCTCTC TAACCTCGTT CTGGCCCCCT
  CCTGGGCTCT GACCTAGAAA AAGAAGCTTA TGCCAATGAC CGGCGGGCCT TAGGACCCCG
  CGTGGCCGGA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8727664	WI_WGS_7_116126641	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6321680					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	216 bp downstream
Rr381444	regulatory region 381444	1067 bp downstream
Rr655453	regulatory region 655453	12 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	296 bp upstream
Tssr69003	transcription start site region 69003	311 bp upstream
Tssr69004	transcription start site region 69004	327 bp upstream
Tssr69005	transcription start site region 69005	346 bp upstream
Tssr69006	transcription start site region 69006	358 bp upstream
Tssr69007	transcription start site region 69007	389 bp upstream
Tssr69008	transcription start site region 69008	409 bp upstream
Tssr69009	transcription start site region 69009	472 bp upstream
Tssr69010	transcription start site region 69010	667 bp upstream
Tssr69011	transcription start site region 69011	730 bp upstream