rs6321914 SNP Detail

Summary

• ID
  rs6321914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCTGTC TAAAACTCTC
  ACAGAAAAAC CTAGAAACCC AGGTAGGGTT GGGGTGACAC TTGGACCGAC TGCTCCTGCA
  AGGCCGGATG TCTCCAGCAG GGGGCGGCAA GCACCAAGCT TTGTTTGGCA TGGGTCCCTA
  CAGAGCCCTA CCTCGGTTAC TTTCTATAAC ACGGGTAGAC TTGTGATACC ATTCTCCTAC
  R
  GGAGCCCTGG ACTCAGCTAC TTCTCCATGT AACCATGGAC TCTTAAGTCT TACTATTAGT
  TTCCCATAGA GTGTGAAATA CGAATGCTGT CCATTCTTTC TCCCTGACCC CAGCGCCCCA
  AGTTATACCA ATCTTCACCC CGGGGCAGCC TTCTCTCAAT CTGACAAGAG ACTTCCAAAC
  AACACAAATA AAAGACCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss8727898	WI_WGS_10_62205441	WI	MOUSE	f	SNP							A		G
ss61279715	NES16893281	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G		A	A	G		A	A
ss147125559	ENSMUSSNP2904828	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs6321914					SNP	A	A	A	A	A	A	A	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279715	NES16893281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022945 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	456 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	320 bp downstream