rs6322269 SNP Detail

Summary

• ID
  rs6322269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:11956835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACGTC ACACCTGAAA
  TGGAGAGAAG GCTATAAGAC TGTCTTAAGG GCTTATAAAG CCAACCAAGA AGGGAGTTAA
  TCCATGAACG GGAACATGAA GCTCCCTACC CAAAGGCTCA TTGAGTAAGC CCCTTGACTC
  TTACTGACAT CCACTGACTA CATTAGACAC TGTCATATAA CAGATGACAC AGAACTCAAG
  R
  GAATGTTAGG TGAGAGAAGG TGGTTTCCAC AGGTGGTCTG AAAGATGAAA TAAGTTAATA
  GCCAAGGGGA ATTGTAGGGA TTAGAAAGCC TGGAGAGTAT GAGAGAGAAT GGAAGTTAAT
  TTCTCAACAT GATGAAGTCC CGTAGTCCTT CAAGAGATCT AGACCATAGT AGAGCCTGTT
  TCATTTATTT TAAGTTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8728253	WI_WGS_15_11988730	WI	MOUSE	f	SNP							G		A
ss51583096	NES14600891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6322269					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51583096	NES14600891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:11956835 () rs orientation: forward

Symbol	Name	Function Class
Gm34618	predicted gene, 34618	within coordinates