rs6322327 SNP Detail

Summary

• ID
  rs6322327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:11956874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTAAG GGCTTATAAA
  GCCAACCAAG AAGGGAGTTA ATCCATGAAC GGGAACATGA AGCTCCCTAC CCAAAGGCTC
  ATTGAGTAAG CCCCTTGACT CTTACTGACA TCCACTGACT ACATTAGACA CTGTCATATA
  ACAGATGACA CAGAACTCAA GGGAATGTTA GGTGAGAGAA GGTGGTTTCC ACAGGTGGTC
  Y
  GAAAGATGAA ATAAGTTAAT AGCCAAGGGG AATTGTAGGG ATTAGAAAGC CTGGAGAGTA
  TGAGAGAGAA TGGAAGTTAA TTTCTCAACA TGATGAAGTC CCGTAGTCCT TCAAGAGATC
  TAGACCATAG TAGAGCCTGT TTCATTTATT TTAAGTTCCC CAACTCGGTC AGCTTTCCCT
  TTTCCAGTCC ATTCCACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8728311	WI_WGS_15_11988769	WI	MOUSE	f	SNP							T		C
ss51583093	NES14600892	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6322327					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51583093	NES14600892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:11956874 () rs orientation: forward

Symbol	Name	Function Class
Gm34618	predicted gene, 34618	within coordinates