rs6322484 SNP Detail

Summary

• ID
  rs6322484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62023047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCAAGC ACCAAGCTTT
  GTTTGGCATG GGTCCCTACA GAGCCCTACC TCGGTTACTT TCTATAACAC GGGTAGACTT
  GTGATACCAT TCTCCTACAG GAGCCCTGGA CTCAGCTACT TCTCCATGTA ACCATGGACT
  CTTAAGTCTT ACTATTAGTT TCCCATAGAG TGTGAAATAC GAATGCTGTC CATTCTTTCT
  Y
  CCTGACCCCA GCGCCCCAAG TTATACCAAT CTTCACCCCG GGGCAGCCTT CTCTCAATCT
  GACAAGAGAC TTCCAAACAA CACAAATAAA AGACCACCCC CCAAAACACA TATTTATTGT
  TCAATTAATG AACTAACGGG GAGGGGTGAG TGGACTCGGT CAGGGGTGGC TAGTTTTGAA
  TAGCCAGAAA CTCTTGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8728468	WI_WGS_10_62205543	WI	MOUSE	f	SNP			C	T
ss147125564	ENSMUSSNP4058275	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6322484					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62023047 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	354 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	218 bp downstream