rs6322608 SNP Detail

Summary

• ID
  rs6322608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCCTG GTTCCAAATA
  ACCTCGTGAA CCTTGATCCC AAAACACACC TGGAGGAAAG GATGGCTGTT TGGTACTTGG
  AGTATGAGAC ATCAGATATT ACCATATGGG TCTCTAGAGG CAATGAGATG CCAGAAATAT
  CCAGCTTTGG GGGAGAGGAG ACTCTGCAAG TCTAGCACCT GAGATGATAG AGCAGATGAT
  R
  AGTGCTCGTT AAAGCCATGG GAGATGTGAA GTTGAGGCCA CCAAGACATG AAGATGGGAG
  TGGAATGCAG AGCCAAGGTC CAGACTTTTG AATCTACCTA GGGGTGAAGA AACTTAGAGC
  CTGACTGTTT GGTGGGAGTG TAAGCCTGGG TGGGTGGTCT GATGGACAGG ACACTCACCA
  CTGTCAGAGA TTCTGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8728592	WI_WGS_7_34932678	WI	MOUSE	f	SNP								A		G
ss46097533	mCV25291010	ABI	CRAMUS_MOUSE	f	SNP		G	A								A
ss61003693	NES16117368	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G		A	A	A	G	A	G	G
ss149134076	ENSMUSSNP7184786	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6322608					SNP	A	G	A	A	A	A	A	A	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003693	NES16117368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	651 bp proximal
Mtag2	metastasis associated gene 2	769 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	1551 bp upstream
Rr646419	regulatory region 646419	304 bp proximal
Rr646420	regulatory region 646420	626 bp proximal
Rr646421	regulatory region 646421	1312 bp proximal
Tssr72376	transcription start site region 72376	1376 bp downstream