rs6322614 SNP Detail

Summary

• ID
  rs6322614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88432990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAATACAG CAGGCCTGGG
  ATTTAGCTCT GACTGAGCTC CTTAGCATGG CCTTTAGCGA GTCCTCAGTC AAGACCAACT
  CTCCAAAACC AGATGGCCAG AGTGGTACTC ATTCTGAGAG AGGCAGGGAG GCTCTAAAGA
  GTCTTGAGGA TTCAAGCAAT ATGGACTCAT CCCCACGTGT CTGTCGTCTT TGTCTACCAG
  R
  AGCTCCTTGC CAATGACAAA AACTGCACAT CATCTTTGTG TCCCCATGGA CTGTAAACGT
  AGAGATGCAC ACAGTAGTCA GACACTATTG CTAGTGGGAG ATGGGTGATC CAAGCTAGGA
  TTCGGATGCC CAGAGACTCC TTAGTTTACA CGCAGTGTAA GGTACACAAA GGAAACCTTC
  TTGGGGGATG TTTCATATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8728598	WI_WGS_11_89209086	WI	MOUSE	f	SNP							A	G
ss37226072	NES08584304	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6322614					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226072	NES08584304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88432990 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	1696 bp upstream
Tssr110018	transcription start site region 110018	518 bp upstream