rs6322625 SNP Detail

Summary

• ID
  rs6322625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CACAGGGGAA
  AGGACACATT TTTAACTAGA AGTGCAGAAA GACAGCTGCC TGGTTCCAAA TAACCTCGTG
  AACCTTGATC CCAAAACACA CCTGGAGGAA AGGATGGCTG TTTGGTACTT GGAGTATGAG
  ACATCAGATA TTACCATATG GGTCTCTAGA GGCAATGAGA TGCCAGAAAT ATCCAGCTTT
  GGGGGAGAGG AGACTCTGCA AGTCTAGCAC CTGAGATGAT AGAGCAGATG ATNAGTGCTC
  R
  TTAAAGCCAT GGGAGATGTG AAGTTGAGGC CACCAAGACA TGAAGATGGG AGTGGAATGC
  AGAGCCAAGG TCCAGACTTT TGAATCTACC TAGGGGTGAA GAAACTTAGA GCCTGACTGT
  TTGGTGGGAG TGTAAGCCTG GGTGGGTGGT CTGATGGACA GGACACTCAC CACTGTCAGA
  GATTCTGGGT CCCTGAGATG AGTGTTTGTT CAGGTGGAGG TTATAAGATG GGGGTGAGAC
  ACTTAGATCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8728609	WI_WGS_7_34932686	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6322625					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	643 bp proximal
Mtag2	metastasis associated gene 2	761 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	1543 bp upstream
Rr646419	regulatory region 646419	296 bp proximal
Rr646420	regulatory region 646420	618 bp proximal
Rr646421	regulatory region 646421	1304 bp proximal
Tssr72376	transcription start site region 72376	1368 bp downstream