rs6322946 SNP Detail

Summary

• ID
  rs6322946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177152472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGACAGACCC
  AGACCCAGAC CCAGACCCAG ACCCCCTCCC CCCCCCACAC ACACACAAAC CACTTGATTT
  AGGGTCCCTT TCCAATAAAA CATACCAAAC AAACTCACAC TCTTTCTCTT TCTGGGGAAT
  GTTAAATATT GTTAATATGA GAGGTGTCTG TTCCAGGAAC TATGAGCTAC CACATGCAAA
  GTGTTAGATA AAAAGGCAAT TGCTTGTGGC TGGGGAAGGt aagagcattc actactcttc
  R
  agaggacttg agtatagttt ctagcatgca catggctgct tacaactcta taattctagt
  tctgtggact ccaacaccct cttctgggct ccttgggtcc caggcatgca tgtggcactc
  atatacatat acatgtaggc aaaaaaantc atatacncaa aataaaaaAA TATTTTTAAG
  GTAACATTTA GAAAACTAGA CTAATATCTC AATGTTTATT TGGTAATCAC TTTACAGTTA
  AAGAACATCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8728930	WI_WGS_1_178650802	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6322946					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177152472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1660 bp distal
Gm36904	predicted gene, 36904	within coordinates
Rr423982	regulatory region 423982	1542 bp distal