rs6323077 SNP Detail

Summary

• ID
  rs6323077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88433048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCTCAG TCAAGACCAA
  CTCTCCAAAA CCAGATGGCC AGAGTGGTAC TCATTCTGAG AGAGGCAGGG AGGCTCTAAA
  GAGTCTTGAG GATTCAAGCA ATATGGACTC ATCCCCACGT GTCTGTCGTC TTTGTCTACC
  AGAAGCTCCT TGCCAATGAC AAAAACTGCA CATCATCTTT GTGTCCCCAT GGACTGTAAA
  Y
  GTAGAGATGC ACACAGTAGT CAGACACTAT TGCTAGTGGG AGATGGGTGA TCCAAGCTAG
  GATTCGGATG CCCAGAGACT CCTTAGTTTA CACGCAGTGT AAGGTACACA AAGGAAACCT
  TCTTGGGGGA TGTTTCATAT CAGTCACACC TCAGCTGCGG ATGTGGTGTG TGACTGTTGC
  GGGTGAGTGC ACTTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8729061	WI_WGS_11_89209144	WI	MOUSE	f	SNP							C	T
ss37226071	NES08584305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6323077					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226071	NES08584305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88433048 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	1754 bp upstream
Tssr110018	transcription start site region 110018	576 bp upstream