rs6323298 SNP Detail

Summary

• ID
  rs6323298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTAACT CCGATCAAAT
  TTACTCAGGG TCTACTAGCT AGTTAAATCT CTGATTTTAC CTGTTGATCG ATGTAGACCA
  AAAAAAAAAA AAAAGTTACT TGGCCATGCT GGGCCTCACC CACATTTTAT TTCATCTCAA
  CATACCAAAC CTAGCCAGAC TTCCAACTGG GGCTCAGGTC AGAGTGATGC GGCAGAGTCC
  W
  TAGGAGTAGA GGCTTGGGTG GGGCTTATGC TTCGTGTTTC TTCAGATGTC CCTGTGGACA
  CAAAGTGTAG CTGGAGCATC TGTCTAAAGA AGCTGCCACG GAAGTGCAGT CAGGGGAGCA
  ATAAGCTCGC TCCCATCAGC ACGGAGGTCA GCACACAGCA GCGAACTTTA CCTCTGGCCT
  TCTGCACAGA AAGAGGAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8729283	WI_WGS_1_131564023	WI	MOUSE	f	SNP							A		T
ss49673602	NES12996642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		T		A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6323298					SNP	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673602	NES12996642	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417949	regulatory region 417949			1237 bp distal
Rr417950	regulatory region 417950			603 bp distal
Rr417951	regulatory region 417951			within coordinates
Rr417952	regulatory region 417952			596 bp proximal
Tssr8565	transcription start site region 8565			1232 bp downstream
Tssr8566	transcription start site region 8566			1171 bp downstream
Tssr8567	transcription start site region 8567			1122 bp downstream
Tssr8568	transcription start site region 8568			1088 bp downstream
Tssr13523	transcription start site region 13523			601 bp upstream
Tssr13524	transcription start site region 13524			627 bp downstream