rs6323394 SNP Detail

Summary

• ID
  rs6323394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130661013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTACCTG TTGATCGATG
  TAGACCAAAA AAAAAAAAAA AGTTACTTGG CCATGCTGGG CCTCACCCAC ATTTTATTTC
  ATCTCAACAT ACCAAACCTA GCCAGACTTC CAACTGGGGC TCAGGTCAGA GTGATGCGGC
  AGAGTCCATA GGAGTAGAGG CTTGGGTGGG GCTTATGCTT CGTGTTTCTT CAGATGTCCC
  Y
  GTGGACACAA AGTGTAGCTG GAGCATCTGT CTAAAGAAGC TGCCACGGAA GTGCAGTCAG
  GGGAGCAATA AGCTCGCTCC CATCAGCACG GAGGTCAGCA CACAGCAGCG AACTTTACCT
  CTGGCCTTCT GCACAGAAAG AGGAACATGG AAAGAAAGAC ATCAGCATGT AGCCCTAAAC
  GACTGTATCG AGCTTCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8729379	WI_WGS_1_131564076	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6323394					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130661013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417949	regulatory region 417949			1290 bp distal
Rr417950	regulatory region 417950			656 bp distal
Rr417951	regulatory region 417951			within coordinates
Rr417952	regulatory region 417952			543 bp proximal
Tssr8565	transcription start site region 8565			1285 bp downstream
Tssr8566	transcription start site region 8566			1224 bp downstream
Tssr8567	transcription start site region 8567			1175 bp downstream
Tssr8568	transcription start site region 8568			1141 bp downstream
Tssr13523	transcription start site region 13523			654 bp upstream
Tssr13524	transcription start site region 13524			574 bp downstream