rs6323592 SNP Detail

Summary

• ID
  rs6323592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177152620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAGAGGTGTC
  TGTTCCAGGA ACTATGAGCT ACCACATGCA AAGTGTTAGA TAAAAAGGCA ATTGCTTGTG
  GCTGGGGAAG Gtaagagcat tcactactct tcnagaggac ttgagtatag tttctagcat
  gcacatggct gcttacaact ctataattct agttctgtgg actccaacac cctcttctgg
  gctccttggg tcccaggcat gcatgtggca ctcatataca tatacatgta ggcaaaaaaa
  W
  tcatatacnc aaaataaaaa AATATTTTTA AGGTAACATT TAGAAAACTA GACTAATATC
  TCAATGTTTA TTTGGTAATC ACTTTACAGT TAAAGAACAT CTTGCTTTTN TACACAAGCA
  GAGTGCAAAG TCCAAGCATT TAAGACTCAT TTGACAAATA GGCAATTGTA TAAGGCACAT
  GTGTAAGGAC CTTGCCCTTC CATCCTGAGC TTGAGACCCA CCAGTGCTAT GAGCTCCTGG
  AGTAGCAAAT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8729577	WI_WGS_1_178650950	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6323592					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177152620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1808 bp distal
Gm36904	predicted gene, 36904	within coordinates
Rr423982	regulatory region 423982	1690 bp distal