rs6324309 SNP Detail

Summary

• ID
  rs6324309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80411777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGCGAA CCAAAAGCAA
  GTAAATAGAG GGATAACAAG CAGGGGGCCC TATCCCAGGG ATGCCTTGGA GCTGTTGACT
  ACACCGCTGT TAAAGGGGTA GATTGTCAAA TCCCAGTGCA AATCCCAGCT AACATGGATA
  GACCCTTGGA CAGGAAGCGG CCAGTACCTA GCAAAAGGTT TGCCCCATCC AATCCGGGGG
  R
  ATTGGGCATC CCAGAAACAC TGGTGTGGCT AAATCTCGTT GTCCATCTTG GACCTTGACC
  TGACCCATCA CAGGTGTGTG GAGTGGGCCA ACACAAAACG TAGGCGAAGA GTTGTGGTGA
  GGATTTCAAT CCCACTGGAT TGAAGATTCA AGCCCCAACT CCAGGTCCGG GTCGTGGCCT
  CGCTCCACCA TGTTAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8730296	WI_WGS_10_81046604	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6324309					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80411777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	within coordinates
Klf16	Kruppel-like transcription factor 16	Intron
Rr435299	regulatory region 435299	188 bp distal
Rr435300	regulatory region 435300	1368 bp proximal
Rr435301	regulatory region 435301	1533 bp proximal
Tssr98472	transcription start site region 98472	1312 bp downstream
Tssr98473	transcription start site region 98473	1342 bp downstream