rs6324452 SNP Detail

Summary

• ID
  rs6324452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29235415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCCGA CTGTAAGTCA
  TCAATAAATT CCTTCACTAT CTAGAGACTG TCCATAAGTT CTGTGACTCT AGAGAACCCT
  GACTAATACA CAGCCCCTTG AGGTCCTTTT TATAGGAGAG TGCTCACACA GACGACTGTT
  AGAAAGATGC AATGAAAGGG AGGAACAAGG GGAGGGATGC TCATCTAGTG AATGTGGTCA
  Y
  GAGTTTAGTG TAGAGGTTGA AAACGTGTTT TGCAGCTTAC CTAAAGAACA AGAACTTGGC
  AGGGCAGTGG TGGCACACGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGTGGATTT
  CTGAGTTCAA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GGCAGTCAGG GCTACACAGA
  GGAACCCTGT CTCGAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ
ss8730439	WI_WGS_2_29683590	WI	MOUSE	f	SNP	C		T
ss37408166	NES08770712	PERLEGEN	MM_PANEL2	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ
rs6324452					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408166	NES08770712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29235415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	1220 bp proximal
Med27	mediator complex subunit 27	1416 bp upstream
Rr396846	regulatory region 396846	1265 bp upstream
Tssr17001	transcription start site region 17001	1400 bp upstream