rs6325108 SNP Detail

Summary

• ID
  rs6325108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58625986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCT GCAAGGTTCT TGCTGGGCTG
  W
  GTTGAGGCGG ATGAAGGATG TCTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8731095	WI_WGS_1_59181463	WI	MOUSE	f	SNP									T									A
ss16373011	01.059.209	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	A	A	A	A	A	T	T	A	A	T	T	T	T	A	A	A	T	T	A	A	T	T	A	T	T	A	T	T	A	T	T	T	T
ss44977340	mCV23020504	ABI	CRAMUS_MOUSE	f	SNP	T	T	T																	A
ss149138775	ENSMUSSNP1462394	ENSEMBL	ENSEMBL_Sanger	f	SNP			T																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6325108					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	A	A	A	A	A	T	T	A	A	T	T	T	T	A	A	A	T	T	A	A	T	T	A	T	T	A	T	T	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58625986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	30 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	504 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	647 bp distal
Rr411458	regulatory region 411458	433 bp distal
Rr411459	regulatory region 411459	608 bp distal
Rr411460	regulatory region 411460	within coordinates
Tssr93	transcription start site region 93	186 bp downstream
Tssr6781	transcription start site region 6781	426 bp downstream
Tssr6782	transcription start site region 6782	381 bp downstream
Tssr6783	transcription start site region 6783	202 bp downstream
Tssr11786	transcription start site region 11786	509 bp upstream