rs6325109 SNP Detail

Summary

• ID
  rs6325109
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121664204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTGTGAGCAG
  CGGGCTCCCC AGGGCGCCAG GCTGACCTTC CTATCACTGA GCCCTTCCAA GTCTGCATTT
  TCACACAAAT GTGACGACAT CCCAGGCTGA GGGCTGGCAG TGAGAAAATG TGAGATGTTT
  CTGAGCAAAA ACATCTGGCC AAGTGAAGGA GACGGTGAAG TGCTGTGTGG GCTACCATTT
  TCCTAAGCAC ACCCCTTGCT TCTGAATGCT CAGGCAAGTT CTCCGAGTGC TCTTAAGTCG
  M
  AAAGGATTTA GGCAGACGGG TTAATCCAAC CTTTTGTGAC CTCATCTACC ATGAGCATCT
  CCGTCATCAG CTGAGAACAG CCCCTCACTT CCCAGCCGGC GAATCCCTAG GGAGGCCTTG
  GGATGAGAGG TCCCTCCGGC AAAGGCAAGC ATAAGGCCGG GACAGAAGCC ACAGCAGGGC
  TAGTCATGAG CTTGTGCAGT GTTCTTTTTA CACTCACAGA ACAAGAGACA CAGTGTGTCA
  CTGTAAAGGT                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8731096	WI_WGS_5_119589376	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6325109					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121664204 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Tssr48584	transcription start site region 48584	578 bp downstream
Tssr53036	transcription start site region 53036	1083 bp downstream
Tssr53037	transcription start site region 53037	1119 bp downstream