rs6325147 SNP Detail

Summary

• ID
  rs6325147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58626007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGAGGTC AGATTGCTGT
  CAGGTAATTT AGGGAGCTGG TGGGAGACTT CTGGATTACG CATAATCTAA ACTTTATCCA
  GGGAATGCAG AAGTGGAGAG GGCTGAAGGG ATCCGATAAG ACCGGGAGAA GATCCGGGAT
  CTAGCTAGGG AGCGCCGCTG CAAGGTTCTT GCTGGGCTGT GTTGAGGCGG ATGAAGGATG
  Y
  CTTGAGAATT ACGATGGTTG TTAAATCCCA GAGATGTTTT AAACCGCCGC TACCAGATGC
  AATGTACTCC TCGCCTCCTG GCTTTTTGGG TTGTATTTGA ATAGGGTAAA GAACAGCTCA
  GACCCGAAAA TACTTAAAAC TAGAAGAAAT AATTGCAACG GTTGCTTCAC AAGCTTGTAT
  TTTAAGTACG GTTTCCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8731134	WI_WGS_1_59181484	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6325147					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58626007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	51 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	525 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	668 bp distal
Rr411458	regulatory region 411458	454 bp distal
Rr411459	regulatory region 411459	629 bp distal
Rr411460	regulatory region 411460	within coordinates
Tssr93	transcription start site region 93	207 bp downstream
Tssr6781	transcription start site region 6781	447 bp downstream
Tssr6782	transcription start site region 6782	402 bp downstream
Tssr6783	transcription start site region 6783	223 bp downstream
Tssr11786	transcription start site region 11786	530 bp upstream