rs6325530 SNP Detail

Summary

• ID
  rs6325530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80412043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACAGGT GTGTGGAGTG
  GGCCAACACA AAACGTAGGC GAAGAGTTGT GGTGAGGATT TCAATCCCAC TGGATTGAAG
  ATTCAAGCCC CAACTCCAGG TCCGGGTCGT GGCCTCGCTC CACCATGTTA AAAGTACACA
  GAATGGAAAG AAAAATGTTC CGGGCAGCCA CCCCTCACCA CTGCTATGCT ACCACCTAAC
  Y
  CTGCGCGAGA GTCTTCGCTG CCCTTCGGAG GGAATCCGCG CTGCTACCCA GAAGGCCGTA
  ACCCGGATCT ACCGACCCTC TTCACAGATA AGGAAACTGA GGCTGGGGGA GGGCCGAGAA
  AGAACTACGG AACCGGATGT TCTGACCACC AAGGGCGAGA CCATGAAGCG CAGAAAAACA
  GGACAAGAAT ACCAAGCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8731517	WI_WGS_10_81046870	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6325530					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80412043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	within coordinates
Gm26710	predicted gene, 26710	1915 bp upstream
Klf16	Kruppel-like transcription factor 16	within coordinates
Rr435299	regulatory region 435299	454 bp distal
Rr435300	regulatory region 435300	1102 bp proximal
Rr435301	regulatory region 435301	1267 bp proximal
Rr435302	regulatory region 435302	1868 bp proximal
Tssr98472	transcription start site region 98472	1046 bp downstream
Tssr98473	transcription start site region 98473	1076 bp downstream