rs6325895 SNP Detail

Summary

• ID
  rs6325895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122554082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCATCCG ACCATCCCAT
  TATAGATGTA GATAGTTTGA GCGACTATGT GGTTTCTGGA AAATGAACTC AGGATCTTTG
  GAAAGGCAGA CGGTGCTCTT AACCACTGAG CCATCTCTCC AGTCCTGACA GGAACAATTT
  AAAGGAGGAA GCATTTGTTT TGTTCATGGA CTCAGAGATT TCAATCTACA GTCAAGCATA
  Y
  AGTTCCATTC ATGCAAAACA CAGGTCACCT CCCCTGACTT TCTGCATGGG TTTGTTGGGC
  TATGGCCTTC ACCCACTGGC CAATCTCCCC GCCCCCTCTT TTATTTGATT GGTTGTTTGT
  GACAGAGTCT GGATGGGTAG TCCAATGGCT GGCCTCCAAC TCATGATCCT CCTGTCTCAG
  CCTCTTGAGT ACTGAGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8731882	WI_WGS_6_123626186	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6325895					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122554082 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	669 bp downstream
Tssr1999	transcription start site region 1999	1065 bp downstream
Tssr58682	transcription start site region 58682	672 bp upstream
Tssr58683	transcription start site region 58683	748 bp upstream
Tssr58684	transcription start site region 58684	1284 bp upstream
Tssr62861	transcription start site region 62861	783 bp downstream
Tssr62862	transcription start site region 62862	839 bp downstream
Tssr62863	transcription start site region 62863	868 bp downstream
Tssr62864	transcription start site region 62864	887 bp downstream
Tssr62865	transcription start site region 62865	928 bp downstream
Tssr62866	transcription start site region 62866	1054 bp downstream
Tssr62867	transcription start site region 62867	1140 bp downstream
Tssr62868	transcription start site region 62868	1328 bp downstream
Tssr62869	transcription start site region 62869	1540 bp downstream