rs6326152 SNP Detail

Summary

• ID
  rs6326152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191196556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAATTA TCTAATTATA
  ATCTCAAAAT AAAAGATTAT AATATAATTA ACAAGCAATA TAGGGCTTCT CTCGGTACCC
  ACCAGGCCAC TCAGGGAAGA GGTACGGTAA GCATGCCAAT GGAATGCTTT CATCTATAAA
  TTACCTTGGT CATGGTGTTT CATCACAGCA AAAGAACAGT AGCTAAGACA GTGAAGGAGG
  R
  ACATCTCTTT TGTAGCTGCA GCCTGTAAGT TAAACCAGAA AGACAGATTA AGAGCAGAGA
  GCAGAGTTTA ACTCCATGCA GAACACATAT ATGCACGGAT TAGCTCAAAA AGAGTGGTTA
  GACCCTGAGG CCTTTTAACT GCAGTAGGTA AAGAAGAGGG GAAGAAAGGC ATTTATAGAA
  AGCTAACTGC TTAGAAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8732139	WI_WGS_1_192843783	WI	MOUSE	f	SNP							G		A
ss49546302	NES12906319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6326152					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546302	NES12906319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191196556 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr29197	regulatory region 29197	1755 bp distal
Tssr15794	transcription start site region 15794	964 bp downstream