rs6326656 SNP Detail

Summary

• ID
  rs6326656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29235794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAACCCT GTCTCGAAAA
  ACCAAACAAA AACAAACCAA ACAAAAAGAA CAAGAACTTA TTCTTTTTTT TTTCTTTTAA
  GATTTATTTT TATTTTATGT ATGTGAGTAC ACTGTAGCTG ACTTCAGATG CACCAGAAGA
  GGGCATCTGA TCCCACTGCA GATGGTTGTG AGCCACCATG TGGTTGCTGG GAATTGAACT
  Y
  AGGACCTCTG AAAGAGCAGT CAGTGCTCTT AATCGTTGAG CCATCTCTCT AGTCCCAGGA
  ACTTATTCTT AATTACAAAT AAAAACCCTA ACTTGCAAGG ACTTAACATG AGGCAAATAG
  AACTTATTCT TTAATTACAA ACAGAAACTT TAGCCTGCAC AGGACAGAGG AACTTATTCT
  TAACTGTCTT AACTGCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732643	WI_WGS_2_29683969	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326656					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29235794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	841 bp proximal
Med27	mediator complex subunit 27	1037 bp upstream
Rr396846	regulatory region 396846	886 bp upstream
Rr554013	regulatory region 554013	674 bp proximal
Tssr17001	transcription start site region 17001	1021 bp upstream