rs6326754 SNP Detail

Summary

• ID
  rs6326754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32428337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTGCCATTGC
  TGTTTGTCCA ACTTGAGCAG ACTTTTTAGT TCATACAGTA TTAACTCTTT TCTTTCCCAG
  TGACCTGTAC CTCCTAAATG TGCCAAGATG GTTCCATTGC CCAGAAGGAA GCTGTCATCA
  ATGCCTGAAC TTTTAGTTTT CTTAAAAGAT GGGGTCAAGA GAGGCAAAGC ATATGAAGAT
  GCCAAAGCAG GATTTGAGAC TTTAGAAGGG ATTCATGAAA TGCCCATCCC TTCTAGTTTA
  Y
  ACCCAACTCT CTCAGCTGTT ATACTATCAA GTCTTGGGGT TCTCTCTCAT TATTCAGACT
  GGTAGACTTC CCCAGCTCAA CCCACAGCTG AACACAATCA CCCACGACAC CCCCAAACAT
  GGCACTCACA CCCACCCACT TCCTTCTCTT GACAGGGCAA CCCTCATGGA TCCACCCAAT
  GGTTGACTGG CCTTCCAGGG CCTCACCATC ACCCACCACA GCCACCATGT TCCACGAACT
  GGCCTCTCCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8732741	WI_WGS_12_26482117	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6326754					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32428337 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	451 bp upstream
Cpgi4541	CpG island 4541	94 bp proximal
Rr403262	regulatory region 403262	121 bp upstream
Rr464758	regulatory region 464758	within coordinates
Rr464759	regulatory region 464759	1009 bp proximal
Rr464760	regulatory region 464760	1200 bp proximal
Rr464761	regulatory region 464761	1311 bp proximal
Tssr113128	transcription start site region 113128	354 bp upstream
Tssr113129	transcription start site region 113129	426 bp upstream
Tssr113130	transcription start site region 113130	534 bp upstream
Tssr113131	transcription start site region 113131	573 bp upstream
Tssr113132	transcription start site region 113132	732 bp upstream
Tssr113133	transcription start site region 113133	793 bp upstream
Tssr113134	transcription start site region 113134	883 bp upstream
Tssr113135	transcription start site region 113135	1407 bp upstream
Tssr113136	transcription start site region 113136	1567 bp upstream