rs6326788 SNP Detail

Summary

• ID
  rs6326788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43945221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCA GTGAAAAGGC TGAAGCAGAA
  R
  GATTTCTATG CGTTTGTGGC CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8732775	WI_WGS_9_44287975	WI	MOUSE	f	SNP	A	G
ss322940031	CHEV_9_43842007	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6326788					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43945221 () rs orientation: forward

Symbol	Name	Function Class
Gm39323	predicted gene, 39323	within coordinates
Tssr84579	transcription start site region 84579	1743 bp downstream
Tssr84580	transcription start site region 84580	1729 bp downstream
Tssr84581	transcription start site region 84581	1675 bp downstream
Tssr89098	transcription start site region 89098	66 bp downstream
Tssr89099	transcription start site region 89099	132 bp downstream