rs6327250 SNP Detail

Summary

• ID
  rs6327250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58626327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAT AGCAGTTCAT TTGTATTTTC
  Y
  CATATTTTAA TGGTCATCTC AGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8733238	WI_WGS_1_59181804	WI	MOUSE	f	SNP							C	T
ss45094190	mCV23020505	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss49402921	NES12776461	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C				C	C	T	C
ss149138781	ENSMUSSNP5996842	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6327250					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402921	NES12776461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58626327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	371 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	845 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	988 bp distal
Rr411458	regulatory region 411458	774 bp distal
Rr411459	regulatory region 411459	949 bp distal
Rr411460	regulatory region 411460	144 bp distal
Tssr93	transcription start site region 93	527 bp downstream
Tssr6781	transcription start site region 6781	767 bp downstream
Tssr6782	transcription start site region 6782	722 bp downstream
Tssr6783	transcription start site region 6783	543 bp downstream
Tssr11786	transcription start site region 11786	850 bp upstream