rs6327263 SNP Detail

Summary

• ID
  rs6327263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121664553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAAGGCC GGGACAGAAG
  CCACAGCAGG GCTAGTCATG AGCTTGTGCA GTGTTCTTTT TACACTCACA GAACAAGAGA
  CACAGTGTGT CACTGTAAAG GTTCTGGAAA TGGTGCTGAT GGCCTCTACG CTATCCTTGG
  ACCCTGTCCA CATCTCCATT CTTCACTCTC TACTTTGTGA CTTCATTGTG AGACTAAGAC
  R
  ACAGAAAATC ACGGGCCACA ATCTGGCACT GGCAGTTAAG CCTAACCTAG AGCATCAAAG
  GAGACCAAAG ATACAGAACT TACCATGTAT CTGCTCACAG TGTCTGTATT TCCTAGTAAT
  GTGGACTCAT TTATATAATG TACTTAAAAA ACAAATCACA AGCTAATCTA ATCCTCTTGT
  CGCGCACACA CACACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8733251	WI_WGS_5_119589725	WI	MOUSE	f	SNP		G		A
ss60833804	NES16021435	PERLEGEN	MM_PANEL2	f	SNP	G		A		G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6327263					SNP	G	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60833804	NES16021435	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121664553 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	1448 bp proximal
Rr130931	regulatory region 130931	346 bp distal
Tssr48584	transcription start site region 48584	927 bp downstream
Tssr53036	transcription start site region 53036	734 bp downstream
Tssr53037	transcription start site region 53037	770 bp downstream