rs6327558 SNP Detail

Summary

• ID
  rs6327558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:97003421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCATA ATAGAGGACT
  CCCTTCATTG ACAGGGTTTT CCCTTCTCTG ACCTTTTCTA GGGAGTTCAA TACCCACCTG
  AACACACACA CACACACACA CACACACACA CACACACACA TACACCCCTC TATCTGAAGA
  ATGTCATGTA GCCTTAGTTA GGTTGTAGGT TCAACTTCTT TTCTGTCTGC CCCTGCTCCC
  Y
  ATAACCCATT CAGCTAGCAC CCGCGATTCC CAACATACTT CTCCACGCTA ATGAGACAGT
  TTGGTACTTT AACCCTTCAG TTAATGACTT TTGCCTATCC TGGATGTTCC TATCTCTACT
  CCCCCAAATT ATATAAGCCT TGAATAACCC CAGATACAGT TGAACTGTCT CCCTCCAGCT
  GGTCCTGATG TGTCTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733546	WI_WGS_10_97394508	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6327558					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:97003421 () rs orientation: forward

Symbol	Name	Function Class
D10Mit142	DNA segment, Chr 10, Massachusetts Institute of Technology 142	49 bp distal
D10Mit142.2	DNA segment, Chr 10, Massachusetts Institute of Technology 142.2	168 bp distal