rs6327592 SNP Detail

Summary

• ID
  rs6327592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174037931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACAAT AAACTCATAT
  TTAGCTTCAA AAATCAGATT TAGAATCTGA AAATCTTTGG TAAAGAACCT GTTGACCAAA
  TCATGAAGAC CCAAGTTTAA ATCCCCCAAG TACCACAGAA CCTGTTTTTA GTACCAACAC
  TGGGAGAGGA TGGGTAGGCA CAGGAAGCTC CCCAGAGCTT GCTTGTCCAG CTACTCTAGA
  Y
  AAGGTGGTGA GCTCTGGGCT CAGTGAAAGA TATATTCTCA AAAACTAAGG GAGAGAGTAA
  CTGAAGAAGG CACCTGACAT CAAGCCATGA CCTGTAAATG TATATACACT CACATGCACA
  CAATCAAGTG TAACACATAC GATACACACA CATCTAGAAA GGAAGTTTAA AGAATGGTGC
  ACTGGGCATC AGAAAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733580	WI_WGS_1_175518893	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6327592					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174037931 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	1289 bp upstream