rs6327782 SNP Detail

Summary

• ID
  rs6327782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121664647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTGCAGTGT
  TCTTTTTACA CTCACAGAAC AAGAGACACA GTGTGTCACT GTAAAGGTTC TGGAAATGGT
  GCTGATGGCC TCTACGCTAT CCTTGGACCC TGTCCACATC TCCATTCTTC ACTCTCTACT
  TTGTGACTTC ATTGTGAGAC TAAGACNACA GAAAATCACG GGCCACAATC TGGCACTGGC
  AGTTAAGCCT AACCTAGAGC ATCAAAGGAG ACCAAAGATA CAGAACTTAC CATGTATCTG
  Y
  TCACAGTGTC TGTATTTCCT AGTAATGTGG ACTCATTTAT ATAATGTACT TAAAAAACAA
  ATCACAAGCT AATCTAATCC TCTTGTCGCG cacncacaca cacacacaca cacacacaca
  cacacacacg caGAACATTA GTAAGTGGCA TGACCTTTAC CAGCCTGGGG GAGGATACAC
  TGGGCAATGA CATCTCGAAG CTTTTCCAAG GCAACATTTG AGTCCTCAGT TCCATTCTCA
  TGGTCGTGTA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733770	WI_WGS_5_119589819	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6327782					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121664647 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	1354 bp proximal
Rr130931	regulatory region 130931	440 bp distal
Tssr48584	transcription start site region 48584	1021 bp downstream
Tssr53036	transcription start site region 53036	640 bp downstream
Tssr53037	transcription start site region 53037	676 bp downstream