rs6327954 SNP Detail

Summary

• ID
  rs6327954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174037938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAACTCA TATTTAGCTT
  CAAAAATCAG ATTTAGAATC TGAAAATCTT TGGTAAAGAA CCTGTTGACC AAATCATGAA
  GACCCAAGTT TAAATCCCCC AAGTACCACA GAACCTGTTT TTAGTACCAA CACTGGGAGA
  GGATGGGTAG GCACAGGAAG CTCCCCAGAG CTTGCTTGTC CAGCTACTCT AGACAAGGTG
  R
  TGAGCTCTGG GCTCAGTGAA AGATATATTC TCAAAAACTA AGGGAGAGAG TAACTGAAGA
  AGGCACCTGA CATCAAGCCA TGACCTGTAA ATGTATATAC ACTCACATGC ACACAATCAA
  GTGTAACACA TACGATACAC ACACATCTAG AAAGGAAGTT TAAAGAATGG TGCACTGGGC
  ATCAGAAAAA TTAGGTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733943	WI_WGS_1_175518900	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6327954					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174037938 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	1282 bp upstream