rs6328010 SNP Detail

Summary

• ID
  rs6328010
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94903492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTTCTG CCTCTTTGTC
  CTGTGTCTGG TTACCAGCTG TCAGCTTTAT GTCCCTCTCC TTTATCTCCT TATTCTGTCC
  TTGCTCAGTA CTTGAGGCCC TGAAGGTGCA GCTGAGACAT TGCTTGAGCT ACTACAAAAA
  GAAATGACAT TTTAAGAGAG TTCCAAAAAG AAGAAAATGC CCCAAAGGGC ATTTGAGTTT
  S
  TCCAAGTTGC ACTTGACTAG CATGTGAAAG ACCATGGGTT CAGTTCTCGG CATCACAAAA
  AAGAAAAGCA AAACCAGTCA TCAAAGTGAG ACCCCCAAGT GGAATCCTTC CTTTGAAGGC
  AGAGAGGAAA TCTTGTTATA CATGCAGATT CTGGAGTCAT ACCCATTCTG AATCAATATT
  GGAATAGAGG AATGAAGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8733999	WI_WGS_3_95280250	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6328010					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94903492 () rs orientation: forward

Symbol	Name	Function Class
A730011C13Rik	RIKEN cDNA A730011C13 gene	within coordinates
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr397834	regulatory region 397834	893 bp upstream
Rr580775	regulatory region 580775	805 bp proximal
Rr580776	regulatory region 580776	1023 bp proximal
Tssr34411	transcription start site region 34411	916 bp downstream