rs6328307 SNP Detail

Summary

• ID
  rs6328307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121664741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGACCCTGTC
  CACATCTCCA TTCTTCACTC TCTACTTTGT GACTTCATTG TGAGACTAAG ACNACAGAAA
  ATCACGGGCC ACAATCTGGC ACTGGCAGTT AAGCCTAACC TAGAGCATCA AAGGAGACCA
  AAGATACAGA ACTTACCATG TATCTGNTCA CAGTGTCTGT ATTTCCTAGT AATGTGGACT
  CATTTATATA ATGTACTTAA AAAACAAATC ACAAGCTAAT CTAATCCTCT TGTCGCGcac
  R
  cacacacaca cacacacaca cacacacaca cacacgcaGA ACATTAGTAA GTGGCATGAC
  CTTTACCAGC CTGGGGGAGG ATACACTGGG CAATGACATC TCGAAGCTTT TCCAAGGCAA
  CATTTGAGTC CTCAGTTCCA TTCTCATGGT CGTGTATATA AATACCGTCC TTTGGCTTGG
  TGCTTTACAA ATGTGGGAAA GACAAGAGCA AGGTAAGACC TCAGAACCCA GCTCCAAATC
  ACGACACCAG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8734297	WI_WGS_5_119589913	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6328307					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121664741 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	1260 bp proximal
Rr130931	regulatory region 130931	534 bp distal
Tssr48584	transcription start site region 48584	1115 bp downstream
Tssr53036	transcription start site region 53036	546 bp downstream
Tssr53037	transcription start site region 53037	582 bp downstream