rs6328894 SNP Detail

Summary

• ID
  rs6328894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17161242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAAGTG CACAGATGTT
  AATGCAACTA ATGGTTGTGC CAGCTATTCC CTAGAGGTCC TAGACACACA GACTGCCTTA
  GCCCCCACAC CTCTGTCCCT AGGAGAATGA ATGGGCAGAG TGGAGCTGAC ACTCTCTCCT
  CAGGCAGCCT CCTCAGCCTT TATTCGTCAA CGGCCTCTGC TCAGCCAGGC CCTTCCAGAC
  R
  AAAGGCACTG AGGAACTTGC ACCCCTTCCA GGGAGGGTGT CCAAGTAGCA CCGTTCCTGC
  CCAGTGGGAA AGCAATCCCA ACATGTCTGA GATGTTCGGA CTTTTAAATT CATGTAAATA
  TCTCCTCTTC TGCTGTGTGT ACATAGGACT ACATAGTCTA TCCTAGAGAT AAATAAACAA
  CCATATTTAC CATGTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8734886	WI_WGS_16_16815256	WI	MOUSE	f	SNP							A		G
ss48151493	NES12127896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6328894					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151493	NES12127896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17161242 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	1366 bp upstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Rr512361	regulatory region 512361	1885 bp proximal
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates