rs6329184 SNP Detail

Summary

• ID
  rs6329184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52152301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctacagtgt actcatatat aataagtaaa
  taaataataa ataattttaa aaaaTaatcc ttagtaggtt ttgcttagtg ccacattttc
  attttgccct gggctctgca tactatacag ctgctccAGT TTTTTAATGT GGGAAAGAAA
  Y
  GTCCTTTTGC CTTGTGGGAT TTATGTATAA ACTGTATGTT TATACATACC CGTGTGGAAG
  TCCAGTGTGT ATGTGTGTTG GGGGAGGGAG GGGAGGACCA GCTAGGCAGG TCCTTTAGCA
  TACTACCAAG ACTGGCATCG AGTTCACCTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8735177	WI_WGS_1_52671997	WI	MOUSE	f	SNP	T	C
ss319719438	CHEV_1_52169986	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6329184					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52152301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi240	CpG island 240	378 bp proximal
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	within coordinates
Rr366897	regulatory region 366897	within coordinates
Rr410805	regulatory region 410805	within coordinates
Rr410806	regulatory region 410806	599 bp proximal