rs6329539 SNP Detail

Summary

• ID
  rs6329539
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25592882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGATGAG GAAACCGAGA
  CTCCAAGACA TTAGGTAACT TGTTCTGGGT CCCCAGTCAG TAGAGGGCAG GTCTGTCCGG
  TCTAACGCAG GCCTCCCTCG TGGAGACATT GACATTTAAA TATAAGTAAC GCCAGGCAGA
  CAAAGTGGAC TCAATTTTAC GGTAAAATTG TCAGCCCAGG GACCGAGCAC CGAGAGATGC
  S
  GCTTTGGGGG CTGGGGGCGG GGAGGAGGAT GCTGATGTCA GCCGTGTGGG TCCAAGGTAC
  TCGGAGTGTG TAGTGAAAAA GTCGCCCCCG GAAGCTCTGC AGGACTAGGC CTGGCTTCGC
  GGGTGGGAAG TACGGTGCGA GGCAAAGGCA GCCTGGCAGC CTGGGGGCTG AGGGCTGCAG
  CCAGGTGAGC CGGCAGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8735533	WI_WGS_8_23830426	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6329539					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25592882 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	623 bp downstream
Gm63713	predicted gene, 63713	601 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	490 bp upstream
Rr368503	regulatory region 368503	152 bp upstream
Tssr2524	transcription start site region 2524	1239 bp downstream
Tssr76668	transcription start site region 76668	1762 bp downstream
Tssr76669	transcription start site region 76669	980 bp downstream
Tssr76670	transcription start site region 76670	913 bp downstream
Tssr76671	transcription start site region 76671	619 bp upstream
Tssr80677	transcription start site region 80677	1258 bp upstream
Tssr80678	transcription start site region 80678	1153 bp upstream
Tssr80679	transcription start site region 80679	1074 bp upstream
Tssr80680	transcription start site region 80680	697 bp upstream
Tssr80681	transcription start site region 80681	672 bp upstream
Tssr80682	transcription start site region 80682	478 bp upstream
Tssr80683	transcription start site region 80683	296 bp upstream
Tssr80684	transcription start site region 80684	148 bp downstream
Tssr80685	transcription start site region 80685	1795 bp downstream
Tssr80686	transcription start site region 80686	1834 bp downstream
Tssr80687	transcription start site region 80687	1925 bp downstream