rs6329635 SNP Detail

Summary

• ID
  rs6329635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167452400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCAGGC AGTGGGGGAC
  TCACCACTCC ATTCGAACTG CTCACGCCGC TCATATTGAC TCTTGTTACG AATCTTACAG
  ACGGGGGTGC CTCTGGGTAC TTAGGCCCAC ACTCTATCTT AAGGCTGTAT ATTCGGTTTT
  CATAGATTGT CTGGAAAAAA GGAATAGAGA CAAGTTACAG AGACCTAAGA GAGGTACAGC
  Y
  TCCAACACCT GGGAGACACC GTTGCCCCAG ACTGCCTGTC GTGGGTGCCT CAGAGACGGA
  AGCACAGGAC AGACACAGGA GGAAACTAGG GTTAAGTGTC AATGAGTCCG ACCTGAGGCC
  ACTTCTGTAG CATATGCCAT CTGCCCTCAG AGCATTCTTT CTCTTATGTA GTCATGGTGA
  CCTAAGATGC CACCAGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8735629	WI_WGS_2_168594293	WI	MOUSE	f	SNP							T		C
ss37507543	NES08845413	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6329635					SNP	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507543	NES08845413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167452400 () rs orientation: forward

Symbol	Name	Function Class
Gm20431	predicted gene 20431	within coordinates
Rr570662	regulatory region 570662	936 bp proximal
Rr570663	regulatory region 570663	947 bp proximal
Rr570664	regulatory region 570664	1010 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	within coordinates