rs6329958 SNP Detail

Summary

• ID
  rs6329958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17161398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTATTCG TCAACGGCCT
  CTGCTCAGCC AGGCCCTTCC AGACAAAAGG CACTGAGGAA CTTGCACCCC TTCCAGGGAG
  GGTGTCCAAG TAGCACCGTT CCTGCCCAGT GGGAAAGCAA TCCCAACATG TCTGAGATGT
  TCGGACTTTT AAATTCATGT AAATATCTCC TCTTCTGCTG TGTGTACATA GGACTACATA
  K
  TCTATCCTAG AGATAAATAA ACAACCATAT TTACCATGTA TCTGTTATAA TTCTCTCTTA
  TTTATTTTTT ATAGATACAT ATTTTTATTA TTTTTAACTT ATGTGTGTGT ATAGGTGCTT
  CTATAGGCCA AGAGTGTCAG ATCCCCTTGG AGCTGAATTA CAGGCCATTG CAAGCTGCCT
  GATGGGGCGC TGGGAATTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8735953	WI_WGS_16_16815412	WI	MOUSE	f	SNP					G	T
ss48151499	NES12127899	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G			G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6329958					SNP	G	G	G	G	G	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151499	NES12127899	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17161398 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	1522 bp upstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates