rs6330131 SNP Detail

Summary

• ID
  rs6330131
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134290033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTTATTATCT
  TTATGACAAT AACCCCTGTC CTTATGTCCC TAACCCCCAC CCAGGTCCTA GCTACTGTTG
  GCTGAGCCTC CTGCATCCTT GTTAGTATTG GCAATGGTTT ATAGTCATTC CACTAATGTA
  GAGGCATCGT ATATGATCTG AGCGCCCTGA CTGCGAGGNG GAGGCCATCT AGCCCTGGTG
  GGGGCAGGGG CTCACTAAGC ATTGCTGATT GACAACATGA ACAAAGGACC AGGGTGACCA
  S
  GAGATCCCAG AGGCAAGGTG ACTTCAGGCA AACAGAGTCA CCTNCCTGGG CTTCTTCCAC
  TCCTCCATCC GAGTGTGAGT ATTCATACCC AACTCTACCC AAAGGGCTGG CCTCTCATTT
  CCTGCACTTA CTAGGGCCAC CTGGAGAGAG ACAGAGAAGC TGCACCCACT GCCTTTAGTA
  TATCACACNT CAGCTCCTCT GCCAGCTGGT GACGGCTTCG GGTGACACTG TTGGAGGATT
  TTTCTCCCAG                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8736126	WI_WGS_4_132145775	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6330131					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134290033 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	602 bp downstream
Tssr43918	transcription start site region 43918	617 bp downstream
Tssr43919	transcription start site region 43919	645 bp downstream
Tssr43920	transcription start site region 43920	713 bp downstream
Tssr43921	transcription start site region 43921	721 bp downstream
Tssr43922	transcription start site region 43922	755 bp downstream