rs6330155 SNP Detail

Summary

• ID
  rs6330155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25593015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGACAA AGTGGACTCA
  ATTTTACGGT AAAATTGTCA GCCCAGGGAC CGAGCACCGA GAGATGCGGC TTTGGGGGCT
  GGGGGCGGGG AGGAGGATGC TGATGTCAGC CGTGTGGGTC CAAGGTACTC GGAGTGTGTA
  GTGAAAAAGT CGCCCCCGGA AGCTCTGCAG GACTAGGCCT GGCTTCGCGG GTGGGAAGTA
  Y
  GGTGCGAGGC AAAGGCAGCC TGGCAGCCTG GGGGCTGAGG GCTGCAGCCA GGTGAGCCGG
  CAGGAAGGCG GGACGCCCGG CAGCACACGC CCCGAAAGCT CCCCTGATGA AACCGCAGGC
  GCTTCCTCTT CTATTTTGAT AGCCAAAGCG AAAATGAGCC GCCCAGTTCG CTCAGGTGTG
  AAAAAAAGAC GTTTGCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8736150	WI_WGS_8_23830559	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6330155					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25593015 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	490 bp downstream
Gm63713	predicted gene, 63713	468 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	623 bp upstream
Rr368503	regulatory region 368503	19 bp upstream
Rr661038	regulatory region 661038	1773 bp distal
Rr661039	regulatory region 661039	1257 bp distal
Rr661040	regulatory region 661040	1025 bp distal
Rr661041	regulatory region 661041	1166 bp distal
Rr661042	regulatory region 661042	661 bp distal
Rr661043	regulatory region 661043	133 bp distal
Rr661044	regulatory region 661044	260 bp distal
Rr661045	regulatory region 661045	868 bp proximal
Rr661046	regulatory region 661046	1476 bp proximal
Rr661047	regulatory region 661047	1680 bp proximal
Rr661048	regulatory region 661048	1820 bp proximal
Tssr2524	transcription start site region 2524	1372 bp downstream
Tssr76668	transcription start site region 76668	1895 bp downstream
Tssr76669	transcription start site region 76669	1113 bp downstream
Tssr76670	transcription start site region 76670	1046 bp downstream
Tssr76671	transcription start site region 76671	486 bp upstream
Tssr80677	transcription start site region 80677	1391 bp upstream
Tssr80678	transcription start site region 80678	1286 bp upstream
Tssr80679	transcription start site region 80679	1207 bp upstream
Tssr80680	transcription start site region 80680	830 bp upstream
Tssr80681	transcription start site region 80681	805 bp upstream
Tssr80682	transcription start site region 80682	611 bp upstream
Tssr80683	transcription start site region 80683	429 bp upstream
Tssr80684	transcription start site region 80684	15 bp downstream
Tssr80685	transcription start site region 80685	1662 bp downstream
Tssr80686	transcription start site region 80686	1701 bp downstream
Tssr80687	transcription start site region 80687	1792 bp downstream