rs6330582 SNP Detail

Summary

• ID
  rs6330582
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134290077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGGCAA TGGTTTATAG
  TCATTCCACT AATGTAGAGG CATCGTATAT GATCTGAGCG CCCTGACTGC GAGGTGGAGG
  CCATCTAGCC CTGGTGGGGG CAGGGGCTCA CTAAGCATTG CTGATTGACA ACATGAACAA
  AGGACCAGGG TGACCAGGAG ATCCCAGAGG CAAGGTGACT TCAGGCAAAC AGAGTCACCT
  M
  CCTGGGCTTC TTCCACTCCT CCATCCGAGT GTGAGTATTC ATACCCAACT CTACCCAAAG
  GGCTGGCCTC TCATTTCCTG CACTTACTAG GGCCACCTGG AGAGAGACAG AGAAGCTGCA
  CCCACTGCCT TTAGTATATC ACACCTCAGC TCCTCTGCCA GCTGGTGACG GCTTCGGGTG
  ACACTGTTGG AGGATTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8736581	WI_WGS_4_132145819	WI	MOUSE	f	SNP							C	A
ss37761183	NES09153993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6330582					SNP	C	C	C	C	C	C	C	A	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761183	NES09153993	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134290077 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	558 bp downstream
Tssr43918	transcription start site region 43918	573 bp downstream
Tssr43919	transcription start site region 43919	601 bp downstream
Tssr43920	transcription start site region 43920	669 bp downstream
Tssr43921	transcription start site region 43921	677 bp downstream
Tssr43922	transcription start site region 43922	711 bp downstream