rs6330639 SNP Detail

Summary

• ID
  rs6330639
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25593059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACCGAG CACCGAGAGA
  TGCGGCTTTG GGGGCTGGGG GCGGGGAGGA GGATGCTGAT GTCAGCCGTG TGGGTCCAAG
  GTACTCGGAG TGTGTAGTGA AAAAGTCGCC CCCGGAAGCT CTGCAGGACT AGGCCTGGCT
  TCGCGGGTGG GAAGTACGGT GCGAGGCAAA GGCAGCCTGG CAGCCTGGGG GCTGAGGGCT
  K
  CAGCCAGGTG AGCCGGCAGG AAGGCGGGAC GCCCGGCAGC ACACGCCCCG AAAGCTCCCC
  TGATGAAACC GCAGGCGCTT CCTCTTCTAT TTTGATAGCC AAAGCGAAAA TGAGCCGCCC
  AGTTCGCTCA GGTGTGAAAA AAAGACGTTT GCTTTAGAAC ATTATGCTCT GAATGAGGAA
  GGAAAAGAAA ACGAGGTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8736638	WI_WGS_8_23830603	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6330639					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25593059 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	446 bp downstream
Gm63713	predicted gene, 63713	424 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	667 bp upstream
Rr368503	regulatory region 368503	within coordinates
Tssr2524	transcription start site region 2524	1416 bp downstream
Tssr76668	transcription start site region 76668	1939 bp downstream
Tssr76669	transcription start site region 76669	1157 bp downstream
Tssr76670	transcription start site region 76670	1090 bp downstream
Tssr76671	transcription start site region 76671	442 bp upstream
Tssr80677	transcription start site region 80677	1435 bp upstream
Tssr80678	transcription start site region 80678	1330 bp upstream
Tssr80679	transcription start site region 80679	1251 bp upstream
Tssr80680	transcription start site region 80680	874 bp upstream
Tssr80681	transcription start site region 80681	849 bp upstream
Tssr80682	transcription start site region 80682	655 bp upstream
Tssr80683	transcription start site region 80683	473 bp upstream
Tssr80684	transcription start site region 80684	13 bp upstream
Tssr80685	transcription start site region 80685	1618 bp downstream
Tssr80686	transcription start site region 80686	1657 bp downstream
Tssr80687	transcription start site region 80687	1748 bp downstream