rs6331167 SNP Detail

Summary

• ID
  rs6331167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTGGAACTA
  GGATAAAACT GATTGGATCT AGTTGGGTCT CGAGTTATCT TTTTGGGCAA GCCATCAACC
  CTAAGTGTCT CTCCATTGTG TGCTGCAGGG TGCTGTGTTC CTCAGTGCTA CAGCTTCCTG
  ATATGGGAAG GCCTGTAGGC CTCTGTGTTC TTCCTCTTAG AAACAGATGG GCAGTGTCTA
  TGGGCCAGGG CAGCTTCTCC TCTGCCCTGT GGTATGTCTG GCATTGACTT CTCTTTCCAA
  R
  TGTGTTGGGT AATGTGTTTG TAGATAAAGA GGCACGGAGA AAAATGGAAA CCTTTATTAG
  CAGAGATAGC TGGCTTGGAT CAGATTACGG GGAATGTGGG GGAGCCATGA AGAAACTAAC
  TAAAGGGGAG CCTTTGGGGA CCAGGGGGAG ACAAGTCACT ATTTTGAGGG AGAAAGCTCT
  GGATTGNTTC TGACAGGACA CTTGAGTGTG AACTGTCCAA GCTAAGCCTC TGGGTGTGTA
  GAGAGAGCCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8737168	WI_WGS_10_77145631	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6331167					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544587 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	39 bp downstream
Tssr98195	transcription start site region 98195	349 bp downstream
Tssr98196	transcription start site region 98196	545 bp downstream
Tssr98197	transcription start site region 98197	738 bp downstream
Tssr98198	transcription start site region 98198	782 bp downstream
Tssr98199	transcription start site region 98199	889 bp downstream
Tssr98200	transcription start site region 98200	930 bp downstream