rs6331693 SNP Detail

Summary

• ID
  rs6331693
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:135502057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTGGGTT TCCTCTGCCT
  ACCCGGACGT TCACCCTCTT CTGCGCTAGA AATAGCTCGG CTCGACGTGT ATATGATTAT
  TTTGGTTGGA AATAGTTGGC ACTGTGCAAC GCATGTAAAT GTGTGTGCGT GTGCATCTTC
  AGCGTCTTCT GGGGACAGCT TACGAATGAT AGACCGTTTC CAGTTGACAC TGACAGGCTA
  M
  GCGCTCCTTC AGGACAGTAT CTGGGCCTCC TAAAAGCATG TAAAAGAACA TTGCTTTATT
  TTCAGAAGTT TAAAGTTGTT TTTTCTTAGT CAATTAGAAA TTGTCTATAT TGTACAATTT
  TTGAGTTTAG ACTCAGTAAA CTACTGAATC TAAGTGTGAA AACACAGAAT TTTCCAATTG
  AACAACTCTA GAGTTATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8737695	WI_WGS_2_136682675	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6331693					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135502057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12321	CpG island 12321			15 bp distal
Plcb4	phospholipase C, beta 4			Intron
				Noncoding-Transcript-Variant
Rr565765	regulatory region 565765			within coordinates
Tssr20369	transcription start site region 20369			963 bp downstream
Tssr20370	transcription start site region 20370			780 bp downstream
Tssr20371	transcription start site region 20371			546 bp downstream
Tssr20372	transcription start site region 20372			533 bp downstream
Tssr20373	transcription start site region 20373			487 bp downstream
Tssr20374	transcription start site region 20374			424 bp downstream