rs6331812 SNP Detail

Summary

• ID
  rs6331812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84431731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAGGAAG AAATGGGAAG
  GAAGCAAAGG TTGGGGGGAG GGGGTGACTG CAATGTATAA GAAAAGGAGT TGGTGGGCTG
  TGCACTTTTC TCCTACCCCA TAGCCTCAAT ATATTAAGGA ACAGGACAAG AGGGATAAAG
  AATTCCAGTT GCATTGAATA GAGCTTTTAG ATTAAGGAAA GAAAATAAGG AAAAATGTTT
  W
  AAAAAAATTG CACCCACATA GTAGCTGCTT CTCTAGCCAA GCTGTAACAC TCACTACAAC
  AGAAAAGGGT GTAATGGAGG CATGGCCTGA TTCCCTGTAG CCTTTCAGAG ATGATGGGAA
  CTGGGGACGA CTAAGGAGTC AGAGTCACAG CACTCCCTCC TAACAGCCTC ACTTTGAGAC
  TTATCGGGAT GGATTTTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8737814	WI_WGS_2_85490847	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6331812					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84431731 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	52 bp downstream
Tssr25005	transcription start site region 25005	70 bp downstream
Tssr25006	transcription start site region 25006	129 bp downstream