rs6332247 SNP Detail

Summary

• ID
  rs6332247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34874615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAAAGC ACTCTCACCT
  TATAGGACAA GGCTGGATTC CCATGATTCA TCAGCCTCTA TTACATTACC CTCACTGCAT
  GGAATCTGGG AAAGAGCAGA GTGTGCGGAC AATATGCTTT CTCAGTTTTG AAAGTTCTAA
  GTAGGGAGGG TTAAATAAAA AATTTCTTCT TAAACTCAGA AATAGCTAGA AAATTCCTTT
  Y
  CCTGGGTGCC ATGATTCATT AGGCTCAACT TAAAGACTTA AAGGTTTCGT TCATGATCAT
  CCTTCAATAC TTTTTTTTTT TTTTGGTGGG GTTGCAAGGA TAGGATTAGG GAGGGGCAAG
  ACAGATTATG TTAAAACGTT AAATGTTAAA ACTCTTAACA CAGTTCTAGG GTAAAACAAT
  ACTTACTGCT CCTAATTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8738250	WI_WGS_15_34978868	WI	MOUSE	f	SNP						C		T
ss49449306	NES12597366	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6332247					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449306	NES12597366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34874615 () rs orientation: forward

Symbol	Name	Function Class
Rr390556	regulatory region 390556	1738 bp downstream
Stk3	serine/threonine kinase 3	1030 bp downstream
Tssr133982	transcription start site region 133982	1741 bp downstream
Tssr133983	transcription start site region 133983	1861 bp downstream