rs6332382 SNP Detail

Summary

• ID
  rs6332382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:127598622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGATCTA TGAGACCTCA
  AGGCCAGCCT GGTCTGCAGA ACTAGTTCCA GGACAGCCAG GGCTATATAG TATAACCCTG
  TCTTAAAACA GACAGAAACA AACAGATCTA AGGGCGGGCT GGGGAGCTCC GGGTGTAGTT
  CAGTGGTGGC AAGTTTGGTT TTCCTGAGTG AGACTCCGAT GAGGGGCAAG GGAGAGATCA
  Y
  AAATGGTCGT TAGGAAAACT CAGAAGCCGA TGTAGAGAAT TCAAGACAGT ATTAAGAGTA
  AAAGGATGAA GCCATCCAGA AATAAGGACT GGGTTTTAAA AACAGAGCAA ATCCAGAAGA
  TCCAGACTTA AGATCAGCAG CGAGGATAAA TGGGAACGCA ACACCGCAAA TGGCAGGAAG
  TAAGAGAACT GAAGGGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8738385	WI_WGS_8_126888606	WI	MOUSE	f	SNP							T		C
ss60676593	NES16238040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6332382					SNP	T	T	T	T	T	T	T	C	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60676593	NES16238040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:127598622 () rs orientation: forward

Symbol	Name	Function Class
Gm31718	predicted gene, 31718	within coordinates
Rr188682	regulatory region 188682	23 bp distal
Rr188683	regulatory region 188683	179 bp proximal
Tssr83525	transcription start site region 83525	794 bp downstream