rs6332491 SNP Detail

Summary

• ID
  rs6332491
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103244167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGCACA CAGACAGCAC
  CCGCACGCCA TTCGCACACT CTCCCACTCA CACACACTCA CACGCACGCG CGCGCACACA
  CACACACACA CACACACACA CACGCTCTCC CCGCCGGCAT CCCTTGCTCG GCTCCTCGCT
  CGGCTAGCCC TCGGTTCCTC GCAGCCGCCA CCCCCACCCC CAGCTGCCGC CCGCCGGCTC
  S
  AGCCGGCCCG GGGAGCCAGG GAGAAGGCCC GGGGGGGATG GGGGAGGCTG CATGGCAGCG
  CTCAGACTCA CCTCGCAGGC CGCCTCCCGA GGCGCACGTC GCTGGTGGGT CCTTGCTGCC
  GGCGTCCCGA GCTGGGACGG TCGCAGTCAA GGCTGGGCTG CCGCCGCCGT CGCCGTCGCC
  GGAGCTGCTA GAGCTGCCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8738494	WI_WGS_X_87042996	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6332491					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103244167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22895	CpG island 22895	within coordinates
Nexmif	neurite extension and migration factor	within coordinates
Rr693074	regulatory region 693074	within coordinates
Rr693075	regulatory region 693075	546 bp proximal
Tssr161734	transcription start site region 161734	284 bp upstream
Tssr163977	transcription start site region 163977	538 bp downstream
Tssr163978	transcription start site region 163978	565 bp downstream
Tssr163979	transcription start site region 163979	617 bp downstream