rs6332690 SNP Detail

Summary

• ID
  rs6332690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135502189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGGTTGGAAA
  TAGTTGGCAC TGTGCAACGC ATGTAAATGT GTGTGCGTGT GCATCTTCAG CGTCTTCTGG
  GGACAGCTTA CGAATGATAG ACCGTTTCCA GTTGACACTG ACAGGCTANG CGCTCCTTCA
  GGACAGTATC TGGGCCTCCT AAAAGCATGT AAAAGAACAT TGCTTTATTT TCAGAAGTTT
  AAAGTTGTTT TTTCTTAGTC AATTAGAAAT TGTCTATATT GTACAATTTT TGAGTTTAGA
  Y
  TCAGTAAACT ACTGAATCTA AGTGTGAAAA CACAGAATTT TCCAATTGAA CAACTCTAGA
  GTTATAAAGC CAGCATTTCT AGAAAGGCAA ATGTCTTATA TTCCACAAAT ATGCATGCAT
  TTGAGATATG ACTTTAAAAA AATAACCCTA AACTTCTATA GTGCTTCTTC CTATTTCTCT
  AAAGCAAGGG GCTTGAGATT TAATTTGGGG CAAAACATTC ATGGACAGTC GCCATCTTTT
  GAAGTAGAAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8738694	WI_WGS_2_136682807	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6332690					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135502189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	147 bp distal
Plcb4	phospholipase C, beta 4	within coordinates
Rr55690	regulatory region 55690	within coordinates
Tssr20369	transcription start site region 20369	1095 bp downstream
Tssr20370	transcription start site region 20370	912 bp downstream
Tssr20371	transcription start site region 20371	678 bp downstream
Tssr20372	transcription start site region 20372	665 bp downstream
Tssr20373	transcription start site region 20373	619 bp downstream
Tssr20374	transcription start site region 20374	556 bp downstream