rs6333076 SNP Detail

Summary

• ID
  rs6333076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36533205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAAACA AAATCTTATT
  TCACTAATAT TTGACTTCAA TTGTTAATTT CATGCAATAT TATGTATGAC TCAGATCTCC
  AAATAAAAAT AAAATTCCCC ATCTAATTCT CATCTTCTGT TAATTTTTAA CTCGATTTAA
  CCCAGCATAA TTGCCTACAT GGGATCCTAC TTACAGTGTG CCATGGTTAG TAGGAAAGCC
  R
  AATAGAAAGT GGTGTCTTTA TGGCTGTCTT TCCTAGATTC TGTGCTAAAA TGCAGTTAAT
  TACAAATTAC TGTTATTCTT ACATAAAACA ATGCCACCCC AACATTTCTT CTTCCTAAGA
  TAGCATGTTA AATTTGGTCC CTGTTCTTTA ATGTTTAACT CTTTCCAGCT TTTATTCCGA
  ATGAAAATGA AAACAATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8739083	WI_WGS_12_30612963	WI	MOUSE	f	SNP							G		A
ss38987103	mCV22951273	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss61597393	NES17553370	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A		G		A	G	G		G	G	G	G		A
ss137630569	ENSMUSSNP3984156	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss324008680	CHEV_12_37209793	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6333076					SNP	G	A	G	A	A	A	G	G	A	A	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597393	NES17553370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36533205 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	718 bp downstream
Rr465183	regulatory region 465183	219 bp proximal